爱漫岛

Magazine Article

Band Aid sang 'feed the world' 40 years ago - where is hunger still an issue today?

Norman R (2024) Band Aid sang 'feed the world' 40 years ago - where is hunger still an issue today?. The Conversation. 27.11.2024. https://theconversation.com/band-aid-sang-feed-the-world-40-years-ago-where-is-hunger-still-an-issue-today-244564

Presentation / Talk

Predicting the impact of climate change on tick populations- a dynamic GIS approach

Norman R (2024) Predicting the impact of climate change on tick populations- a dynamic GIS approach. Royal Society Publishing Systems Biology Seminars, 01.11.2024. https://doi.org/10.52843/cassyni.dw8w3r

Article

COVID-19 in Scottish care homes: A metapopulation model of spread among residents and staff

Baister M, McTaggart E, McMenemy P, Megiddo I & Kleczkowski A (2024) COVID-19 in Scottish care homes: A metapopulation model of spread among residents and staff. Epidemics, 48, Art. No.: 100781. https://www.sciencedirect.com/science/article/pii/S1755436524000422; https://doi.org/10.1016/j.epidem.2024.100781

Article

GIS-ODE: linking dynamic population models with GIS to predict pathogen vector abundance across a country under climate change scenarios

Worton AJ, Norman RA, Gilbert L & Porter RB (2024) GIS-ODE: linking dynamic population models with GIS to predict pathogen vector abundance across a country under climate change scenarios. Journal of the Royal Society Interface, 21 (217). https://doi.org/10.1098/rsif.2024.0004

Article

Modelling norovirus dynamics within oysters emphasises potential food safety issues associated with current testing & depuration protocols

McMenemy P, Kleczkowski A & Taylor NGH (2023) Modelling norovirus dynamics within oysters emphasises potential food safety issues associated with current testing & depuration protocols. Food Microbiology, 116, Art. No.: 104363. https://doi.org/10.1016/j.fm.2023.104363

Article

A modeling study of the impact of treatment policies on the evolution of resistance in sea lice on salmon farms

Trombetta E, Jakubiak S, Kutkova S, Lipschutz D, O'hare A & Enright JA (2023) A modeling study of the impact of treatment policies on the evolution of resistance in sea lice on salmon farms. PLoS ONE.

Article

Playing the political game: the coevolution of institutions with group size and political inequality

Powers ST, Perret C & Currie TE (2023) Playing the political game: the coevolution of institutions with group size and political inequality. Philosophical Transactions of the Royal Society B: Biological Sciences, 378 (1883). https://doi.org/10.1098/rstb.2022.0303

Research Report

Investigating Causal links from Observed Features in the first COVID-19 Waves in California

Good S & O'Hare A (2023) Investigating Causal links from Observed Features in the first COVID-19 Waves in California. ArXiv: Ithaca, New York. https://doi.org/10.48550/arXiv.2303.14485

Article

Perturbation responses in co-evolved model meta-communities

Abernethy G (2022) Perturbation responses in co-evolved model meta-communities. Ecology and Evolution, 12 (11), Art. No.: e9534. https://doi.org/10.1002/ece3.9534

Newspaper Article

Maths' missing millions could be answer to multiple modern problems

Norman R (2022) Maths' missing millions could be answer to multiple modern problems. Press and Journal. 28.09.2022.

Image

Emma + racket=a winning formula

Norman R (2022) Emma + racket=a winning formula [Maths+tennis]. [Newspaper article] 03.07.2022. https://www.pressreader.com/uk/sunday-express-1070/20220703/282114935271462

Review

A Quantitative Systems Pharmacology perspective on the importance of parameter identifiability

Sher A, Niederer SA, Mirams GR, Kirpichnikova A, Allen R, Pathmanathan P, Gavaghan DJ, Van Der Graaf PH & Noble D (2022) A Quantitative Systems Pharmacology perspective on the importance of parameter identifiability. Bulletin of Mathematical Biology, 84 (3), Art. No.: 39. https://doi.org/10.1007/s11538-021-00982-5

Conference Paper (published)

Effective use of evolutionary computation to parameterise an epidemiological model

Mitchell R, Cairns D, Hamami D, Pollock K & Shankland C (2021) Effective use of evolutionary computation to parameterise an epidemiological model. In: Cazzaniga P, Besozzi D, Merelli I & Manzoni L (eds.) Computational Intelligence Methods for Bioinformatics and Biostatistics. Lecture Notes in Computer Science, 12313. CIBB 2019: 16th 爱漫岛 Conference on Computational Intelligence methods for Bioinformatics and Biostatistics, Bergamo, Italy, 04.09.2019-06.09.2019. Cham, Switzerland: Springer. https://doi.org/10.1007/978-3-030-63061-4_3

Conference Paper (published)

Monitoring water hyacinth in Kuttanad, India using Sentinel-1 SAR data

Simpson M, Marino A, Prabhu GN, Bhowmik D, Rupavatharam S, Datta A, Kleczkowski A, Sujeetha JARP & Maharaj S (2021) Monitoring water hyacinth in Kuttanad, India using Sentinel-1 SAR data. In: 2020 IEEE India Geoscience and Remote Sensing Symposium (InGARSS). IEEE 爱漫岛 India Geoscience and Remote Sensing Symposium 2020 (InGARSS), Online, 02.12.2020-05.12.2020. Piscataway, NJ, USA: IEEE. https://doi.org/10.1109/InGARSS48198.2020.9358977

Conference Paper (published)

Monitoring Aquatic Weeds In Indian Wetlands Using Multitemporal Remote Sensing Data With Machine Learning Techniques

Akbari V, Simpson M, Maharaj S, Marino A, Bhowmik D, Prabhu GN, Rupavatharam S, Datta A, Kleczkowski A & Sujeetha JARP (2021) Monitoring Aquatic Weeds In Indian Wetlands Using Multitemporal Remote Sensing Data With Machine Learning Techniques. In: 2021 IEEE 爱漫岛 Geoscience and Remote Sensing Symposium IGARSS. 爱漫岛 Geoscience and Remote Sensing Symposium (IGARSS), Belgium, 12.07.2021-16.07.2021. Piscataway, NJ, USA: IEEE. https://doi.org/10.1109/IGARSS47720.2021.9553207

Article

A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir

O’Hare A, Balaz D, Wright DM, McCormick C, McDowell S, Trewby H, Skuce RA & Kao RR (2021) A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir. PLOS Computational Biology, 17 (6), Art. No.: e1009005. https://doi.org/10.1371/journal.pcbi.1009005

Conference Paper (published)

Comparing a Game v. Non-Game approach for plant provenance public education

Docherty C, Rutherford A, Jones G & Maharaj S (2021) Comparing a Game v. Non-Game approach for plant provenance public education. In: Gabron S (ed.) GSGS '21 - 爱漫岛 Conference on Gamification and Serious Game Proceeding. Gamification & Serious Game Symposium. GSGS '21 - 爱漫岛 Conference on Gamification and Serious Game, Lausanne, Switzerland, 28.06.2021-09.07.2021. Dublin: Digital Kingdom. https://gsgs.ch/wp-content/uploads/2021/07/gsgs21.pdf

Review

Monitoring the spread of water hyacinth (Pontederia crassipes): challenges and future developments

Datta A, Maharaj S, Prabhu GN, Bhowmik D, Marino A, Akbari V, Rupavatharam S, Sujeetha JAR, Anantrao GG, Poduvattil VK, Kumar S & Kleczkowski A (2021) Monitoring the spread of water hyacinth (Pontederia crassipes): challenges and future developments. Frontiers in Ecology and Evolution, 9, Art. No.: 631338. https://doi.org/10.3389/fevo.2021.631338

Article

How to get high resolution results from sparse and coarsely sampled data

Cuyt A & Lee W (2020) How to get high resolution results from sparse and coarsely sampled data. Applied and Computational Harmonic Analysis, 48 (3), pp. 1066-1087. https://doi.org/10.1016/j.acha.2018.10.001

Commentary

From Farm to Fork: growing a Scottish Food System that doesn't cost the Planet

Reay D, Warnatzsch EA, Craig E, Dawson L, George S, Norman R & Ritchie P (2020) From Farm to Fork: growing a Scottish Food System that doesn't cost the Planet. Frontiers in Sustainable Food Systems, 4, Art. No.: 72. https://doi.org/10.3389/fsufs.2020.00072

Article

The Contact Structure of Great Britain's Salmon and Trout Aquaculture Industry

Jones AE, Munro LA, Green DM, Morgan KL, Murray AG, Norman R, Salama NKG, Ryder D, Taylor NGH, Thrush MA, Wallace IS & Sharkey KJ (2019) The Contact Structure of Great Britain's Salmon and Trout Aquaculture Industry. Epidemics, 28, Art. No.: 100342. https://doi.org/10.1016/j.epidem.2019.05.001

Article

The importance of fisheries and aquaculture production for nutrition and food security

Norman R, Crumlish M & Stetkiewicz S (2019) The importance of fisheries and aquaculture production for nutrition and food security. Revue Scientifique et Technique - Office 爱漫岛 des Epizooties, 38 (2), pp. 395-407. https://doi.org/10.20506/rst.38.2.2994

Article

A comparison of two methods of using a serious game for teaching marine ecology in a university setting

Ameerbakhsh O, Maharaj S, Hussain A & McAdam B (2019) A comparison of two methods of using a serious game for teaching marine ecology in a university setting. 爱漫岛 Journal of Human-Computer Studies, 127, pp. 181-189. https://doi.org/10.1016/j.ijhcs.2018.07.004

Article

Improving process algebra model structure and parameters in infectious disease epidemiology through data mining

Hamami D, Atmani B, Cameron R, Pollock KG & Shankland C (2019) Improving process algebra model structure and parameters in infectious disease epidemiology through data mining. Journal of Intelligent Information Systems, 52 (3), pp. 477-499. https://doi.org/10.1007/s10844-017-0476-1

Article

One model to rule them all? Modelling approaches across OneHealth for human, animal and plant epidemics

Kleczkowski A, Hoyle A & McMenemy P (2019) One model to rule them all? Modelling approaches across OneHealth for human, animal and plant epidemics. Philosophical Transactions B: Biological Sciences, 374 (1775), Art. No.: 20180255. https://doi.org/10.1098/rstb.2018.0255

Conference Paper (published)

From exponential analysis to Padé approximation and tensor decomposition, in one and more dimensions

Cuyt A, Knaepkens F & Lee W (2018) From exponential analysis to Padé approximation and tensor decomposition, in one and more dimensions. In: Gerdt V, Koepf W, Seiler W & Vorozhtsov E (eds.) Computer Algebra in Scientific Computing. CASC 2018. Lecture Notes in Computer Science (LNCS), 11077. Computer Algebra in Scientific Computing, Lille, France, 17.09.2018-21.09.2018. Cham, Switzerland: Springer 爱漫岛 Publishing, pp. 116-130. https://doi.org/10.1007/978-3-319-99639-4_8

Article

Multivariate exponential analysis from the minimal number of samples

Cuyt A & Lee W (2018) Multivariate exponential analysis from the minimal number of samples. Advances in Computational Mathematics, 44 (4), pp. 987-1002. https://doi.org/10.1007/s10444-017-9570-8

Article

Faint and clustered components in exponential analysis

Cuyt A, Tsai M, Verhoye M & Lee W (2018) Faint and clustered components in exponential analysis. Applied Mathematics and Computation, 327, pp. 93-103. https://doi.org/10.1016/j.amc.2017.11.007

Article

Deterministic sparse FFT for M-sparse vectors

Plonka G, Wannenwetsch K, Cuyt A & Lee W (2018) Deterministic sparse FFT for M-sparse vectors. Numerical Algorithms, 78 (1), pp. 133-159. https://doi.org/10.1007/s11075-017-0370-5

Conference Paper (published)

Superresolution underwater acoustics

Cuyt A, Lee W, Tijskens E, Hong W, Wang J, Cools T & Geerts T (2018) Superresolution underwater acoustics. In: Proceedings of Euronoise 2018. Euronoise 2018, 27.05.2018-31.05.2018. Crete, Greece: Hellenic Institute of Acoustics, pp. 2845-2850. http://www.euronoise2018.eu/docs/papers/469_Euronoise2018.pdf

Article

The tubercular badger and the uncertain curve:- the need for a multiple stressor approach in environmental radiation protection

Mothersill C, Abend M, Bréchignac F, Copplestone D, Geras’kin S, Goodman J, Horemans N, Jeggo P, McBride W, Mousseau TA, O’Hare A, Papineni RVL, Powathil G, Schofield PN & Austin B (2018) The tubercular badger and the uncertain curve:- the need for a multiple stressor approach in environmental radiation protection. Environmental Research, 168, pp. 130-140. https://doi.org/10.1016/j.envres.2018.09.031

Conference Paper (published)

Process Algebra with Layers: Multi-scale Integration Modelling applied to Cancer Therapy

Scott E, Nicol J, Coulter J, Hoyle A & Shankland C (2017) Process Algebra with Layers: Multi-scale Integration Modelling applied to Cancer Therapy. In: Bracciali A, Caravagna G, Gilbert D & Tagliaferri R (eds.) Computational Intelligence Methods for Bioinformatics and Biostatistics. CIBB 2016. Lecture Notes in Computer Science, 10477. CIBB2016: 13th 爱漫岛 Conference on Computational Intelligence methods for Bioinformatics and Biostatistics, 爱漫岛, UK, 01.09.2016-03.09.2016. Cham, Switzerland: Springer, pp. 118-133. https://doi.org/10.1007/978-3-319-67834-4_10

Conference Paper (published)

Sparse interpolation, the FFT algorithm and FIR filters

Briani M, Cuyt A & Lee W (2017) Sparse interpolation, the FFT algorithm and FIR filters. In: Gerdt V, Koepf W, Seiler W & Vorozhtsov E (eds.) Computer Algebra in Scientific Computing - 19th 爱漫岛 Workshop, CASC 2017, Beijing, China, September 18-22, 2017, Proceedings. Lecture Notes in Computer Science (LNCS), 10490. 19th 爱漫岛 Workshop on Computer Algebra in Scientific Computing, Beijing, China, 18.09.2017-22.09.2017. Cham, Switzerland: Springer 爱漫岛 Publishing, pp. 27-39. https://doi.org/10.1007/978-3-319-66320-3

Conference Paper (published)

Validated exponential analysis for harmonic sounds

Briani M, Cuyt A & Lee W (2017) Validated exponential analysis for harmonic sounds. In: Torin A, Hamilton B, Bilbao S & Newton M (eds.) Proceedings of the 20th 爱漫岛 Conference on Digital Audio Effects (DAFx-17). DAFx proceedings series. 20th 爱漫岛 Conference on Digital Audio Effects, Edinburgh, UK, 05.09.2017-09.09.2017. Hamburg, Germany: University of Edinburgh, pp. 222-227. http://www.dafx17.eca.ed.ac.uk/Proceedings.html

Article

Formulation, stabilisation and encapsulation of bacteriophage for phage therapy

Malik DJ, Sokolov IJ, Vinner GK, Mancuso F, Cinquerrui S, Vladisavljevic GT, Clokie MRJ, Garton NJ, Stapley AGF & Kirpichnikova A (2017) Formulation, stabilisation and encapsulation of bacteriophage for phage therapy. Advances in Colloid and Interface Science, 249, pp. 100-133. https://doi.org/10.1016/j.cis.2017.05.014

Article

Decision Support Based on Bio-PEPA Modeling and Decision Tree Induction: A New Approach, Applied to a Tuberculosis Case Study

Hamami D, Baghdad A & Shankland C (2017) Decision Support Based on Bio-PEPA Modeling and Decision Tree Induction: A New Approach, Applied to a Tuberculosis Case Study. 爱漫岛 Journal of Information Systems in the Service Sector, 9 (2), pp. 71-101. https://doi.org/10.4018/IJISSS.2017040104

Article

Breaking beta: deconstructing the parasite transmission function

McCallum H, Fenton A, Hudson PJ, Lee B, Levick B, Norman R, Perkins S, Viney M, Wilson A & Lello J (2017) Breaking beta: deconstructing the parasite transmission function. Philosophical Transactions B: Biological Sciences, 372 (1719), Art. No.: 20160084. https://doi.org/10.1098/rstb.2016.0084

Article

What is a vector?

Wilson A, Morgan E, Booth M, Norman R, Perkins S, Hauffe H, Mideo N, Antonovics J, McCallum H & Fenton A (2017) What is a vector?. Philosophical Transactions B: Biological Sciences, 372 (1719), Art. No.: 20160085. https://doi.org/10.1098/rstb.2016.0085

Article

Waning immunity is associated with periodic large outbreaks of mumps: a mathematical modeling study of Scottish data

Hamami D, Cameron R, Pollock KG & Shankland C (2017) Waning immunity is associated with periodic large outbreaks of mumps: a mathematical modeling study of Scottish data. Frontiers in Physiology, 8, Art. No.: 233. https://doi.org/10.3389/fphys.2017.00233

Article

Reconstructing disease transmission dynamics from animal movements and test data

Enright JA & O'Hare A (2017) Reconstructing disease transmission dynamics from animal movements and test data. Stochastic Environmental Research and Risk Assessment, 31 (2), pp. 369-377. https://doi.org/10.1007/s00477-016-1354-z

Research Report

Environmental tipping points and food system dynamics: Main report

Benton T, Fairweather D, Graves A, Harris J, Jones A, Lenton T, Norman R, O'Riordan T, Pope E & Tiffin R (2017) Environmental tipping points and food system dynamics: Main report. Global Food Security. http://www.foodsecurity.ac.uk/assets/pdfs/environmental-tipping-points-report.pdf

Newspaper Article

Food security looks very different depending on where you are sitting

Norman R (2017) Food security looks very different depending on where you are sitting. The Conversation. 22.01.2017. https://theconversation.com/food-security-looks-very-different-depending-on-where-you-are-sitting-68396

Article

Predicting the potential for natural recovery of Atlantic salmon (Salmo salar L.) populations following the introduction of Gyrodactylus salaris Malmberg, 1957 (Monogenea)

Denholm SJ, Hoyle A, Shinn A, Paladini G, Taylor NGH & Norman R (2016) Predicting the potential for natural recovery of Atlantic salmon (Salmo salar L.) populations following the introduction of Gyrodactylus salaris Malmberg, 1957 (Monogenea). PLoS ONE, 11 (12), Art. No.: e0169168. https://doi.org/10.1371/journal.pone.0169168

Conference Paper (published)

An exploratory case study of interactive simulation for teaching Ecology

Ameerbakhsh O, Maharaj S, Hussain A, Paine CET & Taiksi S (2016) An exploratory case study of interactive simulation for teaching Ecology. In: 2016 15th 爱漫岛 Conference on Information Technology Based Higher Education and Training (ITHET). ITHET 2016: 15th 爱漫岛 Conference on Information Technology Based Higher Education and Training, Istanbul, Turkey, 08.09.2016-10.09.2016. Piscataway, NJ, USA: IEEE. https://doi.org/10.1109/ITHET.2016.7760725

Newspaper Article

Food security and why Christmas dinner is in peril

Norman R (2016) Food security and why Christmas dinner is in peril. The Conversation. 21.12.2016. https://theconversation.com/food-security-and-why-christmas-dinner-is-in-peril-70689

Conference Paper (published)

A short-time Prony method for the detection of transients

Cuyt A, Lee W & Tsai M (2016) A short-time Prony method for the detection of transients. In: Papadrakakis M, Papadopoulos V, Stefanou G & Plevris V (eds.) ECCOMAS Congress 2016 - VII European Congress on Computational Methods in Applied Sciences and Engineering Proceedings. VII European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS Congress 2016), Crete Island, Greece, 05.06.2016-10.06.2016. Athens, Greece: Institute of Structural Analysis and Antiseismic Research, National Technical University of Athens, pp. 4313-4321. https://www.eccomas2016.org/proceedings/pdf/7676.pdf

Conference Paper (published)

Sparse interpolation and rational approximation

Cuyt A & Lee W (2016) Sparse interpolation and rational approximation. In: Hardin D, Lubinsky D & Simanek B (eds.) Modern Trends in Constructive Function Theory. Contemporary Mathematics, 661. Constructive Functions 2014 - Conference in Honor of Ed Saff's 70th Birthday, Nashville, TN, USA, 26.05.2014-30.05.2014. Providence, RI, USA, pp. 229-242. https://bookstore.ams.org/conm-661

Other

Sparse Modelling and Multi-exponential Analysis

Cuyt A, Labahn G, Sidi A & Lee W (2016) Sparse Modelling and Multi-exponential Analysis. Dagstuhl Seminar 15251, Wadern, Germany Dagstuhl Reports, 6 (6), pp. 48-69. https://doi.org/10.4230/DagRep.5.6.48

Article

Optimising Antibiotic Usage to Treat Bacterial Infections

Paterson IK, Hoyle A, Ochoa G, Baker-Austin C & Taylor NGH (2016) Optimising Antibiotic Usage to Treat Bacterial Infections. Scientific Reports, 6, Art. No.: 37853. https://doi.org/10.1038/srep37853

Article

Towards unsupervised fluorescence lifetime imaging using low dimensional variable projection

Zhang Y, Cuyt A, Lee W, Lo Bianco G, Wu G, Chen Y & Li DD (2016) Towards unsupervised fluorescence lifetime imaging using low dimensional variable projection. Optics Express, 24 (23), pp. 26777-26791. https://doi.org/10.1364/oe.24.026777

Conference Paper (published)

Process Algebra with Layers: A Language for Multi-scale Integration Modelling, Illustrated by a Cell Cycle and DNA Damage Case Study

Scott E, Hoyle A & Shankland C (2016) Process Algebra with Layers: A Language for Multi-scale Integration Modelling, Illustrated by a Cell Cycle and DNA Damage Case Study. In: Bracciali A & Caravagna G (eds.) Proceedings of Computational Intelligence Methods for Bioinformatics and Biostatistics. 13th 爱漫岛 Conference on Computational Intelligence methods for Bioinformatics and Biostatistics, 爱漫岛, 01.09.2016-03.09.2016. 爱漫岛: 爱漫岛, pp. 240-246. http://www.cs.stir.ac.uk/events/cibb2016/index.html

Article

Past and future perspectives on mathematical models of tick-borne pathogens

Norman RA, Worton AJ & Gilbert L (2016) Past and future perspectives on mathematical models of tick-borne pathogens. Parasitology, 143 (7), pp. 850-859. https://doi.org/10.1017/S0031182015001523

Presentation / Talk

Gamification for public engagement with invasive tree pests and diseases

Maharaj S, Jones G, Greene P & Docherty C (2016) Gamification for public engagement with invasive tree pests and diseases. First 爱漫岛 European Citizen Science Association (ESCA) Conference 2016: Citizen Science - Innovation in Open Science, Society and Policy, Berlin, 19.05.2016-21.05.2016.

Article

A bio-economic 'war game' model to simulate plant disease incursions and test response strategies at the landscape scale

Cook D, Aurambout J, Villalta O, Liu S, Edwards J & Maharaj S (2016) A bio-economic 'war game' model to simulate plant disease incursions and test response strategies at the landscape scale. Food Security, 8 (1), pp. 37-48. https://doi.org/10.1007/s12571-015-0524-z

Article

Broadwick: a framework for computational epidemiology

O'Hare A, Lycett SJ, Doherty T, Salvador LCM & Kao RR (2016) Broadwick: a framework for computational epidemiology. BMC Bioinformatics, 17 (1), Art. No.: 65. https://doi.org/10.1186/s12859-016-0903-2

Article

Protection motivation theory and social distancing behaviour in response to a simulated infectious disease epidemic

Williams L, Rasmussen S, Kleczkowski A, Maharaj S & Cairns N (2015) Protection motivation theory and social distancing behaviour in response to a simulated infectious disease epidemic. Psychology, Health and Medicine, 20 (7), pp. 832-837. https://doi.org/10.1080/13548506.2015.1028946

Conference Paper (unpublished)

Gamification for public engagement with invasive tree pests and diseases

Maharaj S (2015) Gamification for public engagement with invasive tree pests and diseases. European Citizen Science Association conference, Berlin.

Article

Numerical reconstruction of convex polytopes from directional moments

Collowald M, Cuyt A, Hubert E, Lee W & Salazar Celis O (2015) Numerical reconstruction of convex polytopes from directional moments. Advances in Computational Mathematics, 41 (6), pp. 1079-1099. https://doi.org/10.1007/s10444-014-9401-0

Article

Inference in High Dimensional Parameter Space

O'Hare A (2015) Inference in High Dimensional Parameter Space. Journal of Computational Biology, 22 (11), pp. 997-1004. https://doi.org/10.1089/cmb.2015.0086

Article

Spontaneous social distancing in response to a simulated epidemic: a virtual experiment

Kleczkowski A, Maharaj S, Rasmussen S, Williams L & Cairns N (2015) Spontaneous social distancing in response to a simulated epidemic: a virtual experiment. BMC Public Health, 15, Art. No.: 973. https://doi.org/10.1186/s12889-015-2336-7

Research Report

Gamification within plant health in the Forestry Commission

Maharaj S & Greene P (2015) Gamification within plant health in the Forestry Commission. Forestry Commission Scotland. 爱漫岛. http://www.forestry.gov.uk/pdf/Gamification_in_the_FC.pdf/$FILE/Gamification_in_the_FC.pdf

Conference Paper (published)

Strategic Interactions and Information Exchange on Networks: An Agent Based Simulation Model of Landowner Behavior in Conservation Incentive Schemes

Banerjee S & Maharaj S (2015) Strategic Interactions and Information Exchange on Networks: An Agent Based Simulation Model of Landowner Behavior in Conservation Incentive Schemes. In: Miguel F, Amblard F, Barcelo J & Madella M (eds.) Advances in Computational Social Science and Social Simulation: Proceedings of the Social Simulation Conference 2014 Barcelona, Catalunya (Spain), September 15. Social Simulation Conference, Universitat Autonoma Barcelona, 01.09.2014-05.09.2014. Barcelona: Universitat Autònoma de Barcelona Press, pp. 42-46. http://ddd.uab.cat/pub/poncom/2014/125597/advcomsocsci_a2014.pdf

Conference Paper (published)

Using process algebra to model radiation induced bystander effects

Lintott R, McMahon S, Prise K, Addie-Lagorio C & Shankland C (2014) Using process algebra to model radiation induced bystander effects. In: Mendes P, Dada J & Smallbone K (eds.) Computational Methods in Systems Biology: 12th 爱漫岛 Conference, CMSB 2014, Manchester, UK, November 17-19, 2014, Proceedings. Lecture Notes in Computer Science, 8859. Computational Methods in Systems Biology 2014, Manchester, UK, 17.11.2014-19.11.2014. Cham, Switzerland: Springer 爱漫岛 Publishing, pp. 196-210. https://doi.org/10.1007/978-3-319-12982-2_14

Edited Book

Computer Mathematics -- 9th Asian Symposium (ASCM2009), Fukuoka, December 2009, 10th Asian Symposium (ASCM2012), Beijing, October 2012, Contributed Papers and Invited Talks

Feng R, Lee W & Sato Y (eds.) (2014) Computer Mathematics -- 9th Asian Symposium (ASCM2009), Fukuoka, December 2009, 10th Asian Symposium (ASCM2012), Beijing, October 2012, Contributed Papers and Invited Talks. Berlin Heidelberg: Springer-Verlag. https://www.springer.com/gb/book/9783662437988; https://doi.org/10.1007/978-3-662-43799-5

Patent

Smart data sampling and data reconstruction

Cuyt A & Lee W (2014) Smart data sampling and data reconstruction. Issuing Office no. EP2745404B1.

Article

Estimating epidemiological parameters for bovine tuberculosis in British cattle using a Bayesian partial-likelihood approach

O'Hare A, Orton R, Bessell PR & Kao RR (2014) Estimating epidemiological parameters for bovine tuberculosis in British cattle using a Bayesian partial-likelihood approach. Proceedings of the Royal Society B: Biological Sciences, 281 (1783), Art. No.: 20140248. https://doi.org/10.1098/rspb.2014.0248

Conference Paper (published)

Sparse reconstruction of correlated multichannel activity

Peelman S, Van der Herten J, De Vos M, Lee W, Van Huffel S & Cuyt A (2013) Sparse reconstruction of correlated multichannel activity. In: 2013 35th Annual 爱漫岛 Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). 35th Annual 爱漫岛 Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2013), Osaka, Japan, 03.07.2013-07.07.2013. Piscataway, NJ, USA: IEEE, pp. 3897-3900. https://doi.org/10.1109/EMBC.2013.6610396

Article

Reproductive Trade-Offs May Moderate the Impact of Gyrodactylus salaris in Warmer Climates

Denholm SJ, Norman R, Hoyle A, Shinn A & Taylor NGH (2013) Reproductive Trade-Offs May Moderate the Impact of Gyrodactylus salaris in Warmer Climates. PLoS ONE, 8 (10), Art. No.: e78909. https://doi.org/10.1371/journal.pone.0078909

Article

A mathematical model on CTL mediated control of hiv infection in a long-term drug therapy

Roy PK, Chowdhury S, Chatterjee AN, Chattopadhyay J & Norman R (2013) A mathematical model on CTL mediated control of hiv infection in a long-term drug therapy. Journal of Biological Systems, 21 (3), Art. No.: 1350019. https://doi.org/10.1142/S0218339013500198

Article

A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide

Porter R, Norman R & Gilbert L (2013) A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology, 27 (3), pp. 237-246. https://doi.org/10.1111/j.1365-2915.2012.01047.x

Conference Paper (published)

PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study

Scott E, Hoyle A & Shankland C (2013) PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study. In: Bradley J, Heljanko K, Knottenbelt W & Thomas N (eds.) volume 296. PASM'12: Sixth 爱漫岛 Workshop on Practical Applications of Stochastic Modelling, Imperial College London, UK, 17.09.2012-17.09.2012. Elsevier, pp. 211-228. https://doi.org/10.1016/j.entcs.2013.07.014

Conference Paper (published)

Reflections on a virtual experiment addressing human behavior during epidemics

Delaney L, Kleczkowski A, Maharaj S, Rasmussen S & Williams L (2013) Reflections on a virtual experiment addressing human behavior during epidemics. In: SummerSim '13 2013 Summer Simulation Multiconference Toronto, Canada — July 07 - 10, 2013. Simulation series, 45.11. Summer Computer Simulation Conference 2013, Toronto, Canada, 07.07.2013-10.07.2013. Vista, CA: Society for Modeling & Simulation 爱漫岛. http://dl.acm.org/citation.cfm?id=2557732&CFID=279840820&CFTOKEN=77799498

Article

Using process algebra to develop predator-prey models of within-host parasite dynamics

McCaig C, Fenton A, Graham A, Shankland C & Norman R (2013) Using process algebra to develop predator-prey models of within-host parasite dynamics. Journal of Theoretical Biology, 329, pp. 74-81. https://doi.org/10.1016/j.jtbi.2013.03.001

Article

The impact of increased dispersal in response to disease control in patchy environments

Lintott R, Norman R & Hoyle A (2013) The impact of increased dispersal in response to disease control in patchy environments. Journal of Theoretical Biology, 323, pp. 57-68. https://doi.org/10.1016/j.jtbi.2013.01.027

Article

An alternative to killing? Treatment of reservoir hosts to control a vector and pathogen in a susceptible species

Porter R, Norman R & Gilbert L (2013) An alternative to killing? Treatment of reservoir hosts to control a vector and pathogen in a susceptible species. Parasitology, 140 (2), pp. 247-257. https://doi.org/10.1017/S0031182012001400

Article

Developing a framework for risk-based surveillance of tuberculosis in cattle: a case study of its application in Scotland

Bessell PR, Orton R, O'Hare A, Mellor DJ, Logue D & Kao RR (2013) Developing a framework for risk-based surveillance of tuberculosis in cattle: a case study of its application in Scotland. Epidemiology and Infection, 141 (2), pp. 314-323. https://doi.org/10.1017/S0950268812000635

Patent

Smart data sampling and data reconstruction

Cuyt A & Lee W (2013) Smart data sampling and data reconstruction. Issuing Office no. US 9,690,749 B2.

Conference Paper (published)

Measles epidemics and PEPA: An exploration of historic disease dynamics using process algebra

Benkirane S, Norman R, Scott E & Shankland C (2012) Measles epidemics and PEPA: An exploration of historic disease dynamics using process algebra. In: Giannakopoulou D & Mery D (eds.) FM 2012: Formal Methods: 18th 爱漫岛 Symposium, Paris, France, August 27-31, 2012. Proceedings. Lecture Notes in Computer Science, 7436. FM 2012: Formal Methods 18th 爱漫岛 Symposium, Paris, France, 27.08.2012-31.08.2012. Berlin Heidelberg: Springer-Verlag, pp. 101-115. http://link.springer.com/chapter/10.1007%2F978-3-642-32759-9_11; https://doi.org/10.1007/978-3-642-32759-9_11

Conference Paper (published)

Evolving Bio-PEPA process algebra models using genetic programming

Marco D, Shankland C & Cairns D (2012) Evolving Bio-PEPA process algebra models using genetic programming. In: Proc. of the 14th 爱漫岛 Conference on Genetic and Evolutionary Computation (GECCO). GECCO, 14. Fourteenth 爱漫岛 Conference on Genetic and Evolutionary Computation conference (GECCO) 2012, Philadelphia, USA, 07.07.2012-11.07.2012. New York, NY, USA: ACM, pp. 177-184. http://doi.acm.org/10.1145/2330163.2330189; https://doi.org/10.1145/2330163.2330189

Conference Paper (published)

Investigating co-infection dynamics through evolution of Bio-PEPA model parameters: a combined process algebra and evolutionary computing approach

Marco D, Scott E, Cairns D, Graham A, Allen JE, Mahajan SM & Shankland C (2012) Investigating co-infection dynamics through evolution of Bio-PEPA model parameters: a combined process algebra and evolutionary computing approach. In: Gilbert D & Heiner M (eds.) Computational Methods in Systems Biology: 10th 爱漫岛 Conference, CMSB 2012, London, UK, October 3-5, 2012. Proceedings. Lecture Notes in Computer Science, 7605. The 10th Conference on Computational Methods in Systems Biology, CMSB 2012, London, UK, 03.10.2012-05.10.2012. Berlin Heidelberg: Springer-Verlag, pp. 227-246. http://sites.brunel.ac.uk/cmsb2012; https://doi.org/10.1007/978-3-642-33636-2_14

Article

Stocking methods and parasite-induced reductions in capture: Modelling Argulus foliaceus in trout fisheries

McPherson N, Norman R, Hoyle A, Bron J & Taylor NGH (2012) Stocking methods and parasite-induced reductions in capture: Modelling Argulus foliaceus in trout fisheries. Journal of Theoretical Biology, 312, pp. 22-33. https://doi.org/10.1016/j.jtbi.2012.07.017

Article

Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations

Biek R, O'Hare A, Wright D, Mallon T, McCormick C, Orton R, McDowell S, Trewby H, Skuce RA & Kao RR (2012) Whole Genome Sequencing Reveals Local Transmission Patterns of Mycobacterium bovis in Sympatric Cattle and Badger Populations. PLoS Pathogens, 8 (11), Art. No.: e1003008. https://doi.org/10.1371/journal.ppat.1003008

Article

Controlling epidemic spread by social distancing: Do it well or not at all

Maharaj S & Kleczkowski A (2012) Controlling epidemic spread by social distancing: Do it well or not at all. BMC Public Health, 12 (679). https://doi.org/10.1186/1471-2458-12-679

Article

Risk of Foot-and-Mouth Disease Spread Due to Sole Occupancy Authorities and Linked Cattle Holdings

Orton R, Bessell PR, Birch CPD, O'Hare A & Kao RR (2012) Risk of Foot-and-Mouth Disease Spread Due to Sole Occupancy Authorities and Linked Cattle Holdings. PLoS ONE, 7 (4), Art. No.: e35089. https://doi.org/10.1371/journal.pone.0035089

Article

Controlling tick-borne diseases through domestic animal management: a theoretical approach

Porter R, Norman R & Gilbert L (2011) Controlling tick-borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology, 4 (3), pp. 321-339. https://doi.org/10.1007/s12080-010-0080-2

Conference Paper (published)

Optimisation of Process Algebra Models Using Evolutionary Computation

Marco D, Cairns D & Shankland C (2011) Optimisation of Process Algebra Models Using Evolutionary Computation. In: IEEE Congress on Evolutionary Computation (CEC), 2011. IEEE Congress on Evolutionary Computation (CEC) IEEE Congress on Evolutionary Computation, Singapore, 05.06.2011-08.06.2011. Piscataway, NJ: Institute of Electrical and Electronics Engineers (IEEE), pp. 1296-1301. https://doi.org/10.1109/CEC.2011.5949765

Conference Paper (published)

A Participatory Simulation Model for Studying Attitudes to Infection Risk

Maharaj S, Kleczkowski A & McCaldin T (2011) A Participatory Simulation Model for Studying Attitudes to Infection Risk. In: Proceedings of the Summer Computer Simulation Conference 2011 (SCSC 2011). Summer Computer Simulation Conference 2011 (SCSC 2011), The Hague, NL, 27.06.2011-30.06.2011. California: Society for Modeling and Simulation 爱漫岛 Vista / ACM Digital Library, pp. 8-13.

Article

Modelling the koi herpesvirus (KHV) epidemic highlights the importance of active surveillance within a national control policy

Taylor NGH, Norman R, Way K & Peeler EJ (2011) Modelling the koi herpesvirus (KHV) epidemic highlights the importance of active surveillance within a national control policy. Journal of Applied Ecology, 48 (2), pp. 348-355. http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2664.2010.01926.x/abstract?systemMessage=Wiley+Online+Library+will+be+disrupted+on+9+June+from+10%3A00-12%3A00+BST+%2805%3A00-07%3A00+EDT%29+for+essential+maintenance; https://doi.org/10.1111/j.1365-2664.2010.01926.x

Article

A Symbolic Investigation of Superspreaders

McCaig C, Begon M, Norman R & Shankland C (2011) A Symbolic Investigation of Superspreaders. Bulletin of Mathematical Biology, 73 (4), pp. 777-794. https://doi.org/10.1007/s11538-010-9603-7

Article

From Individuals to Populations: a mean field semantics for process algebra

McCaig C, Norman R & Shankland C (2011) From Individuals to Populations: a mean field semantics for process algebra. Theoretical Computer Science, 412 (17), pp. 1557-1580. http://www.sciencedirect.com/science/journal/03043975; https://doi.org/10.1016/j.tcs.2010.09.024

Article

A rigorous approach to investigating common assumptions about disease transmission: Process algebra as an emerging modelling methodology for epidemiology

McCaig C, Begon M, Norman R & Shankland C (2011) A rigorous approach to investigating common assumptions about disease transmission: Process algebra as an emerging modelling methodology for epidemiology. Theory in Biosciences, 130 (1), pp. 19-29. http://www.springerlink.com/content/1431-7613/; https://doi.org/10.1007/s12064-010-0106-8

Conference Paper (published)

Stay at Home, Wash Your Hands: Epidemic Dynamics with Awareness of Infection

Kleczkowski A & Maharaj S (2010) Stay at Home, Wash Your Hands: Epidemic Dynamics with Awareness of Infection. In: SummerSim '10 2010 Summer Simulation Multiconference. Summer Simulation Multiconference, Ottawa, Canada, 01.07.2010. San Diego: Society for Computer Simulation 爱漫岛, pp. 141-146. http://dl.acm.org/citation.cfm?id=1999432

Conference Paper (unpublished)

Modelling Immunological Systems using PEPA: a preliminary report

Scott E, Mahajan SM, Brand-Spencer T, Allen JE, Norman R, Graham AL & Shankland C (2010) Modelling Immunological Systems using PEPA: a preliminary report. 9th Workshop on Process Algebra and Stochastically Timed Activities (PASTA 2010), London, UK, 06.09.2010-07.09.2010. http://aesop.doc.ic.ac.uk/conferences/pasta/2010

Conference Paper (published)

Modelling the bubonic plague in a prairie dog burrow: a work in progress

Benkirane S, Shankland C, Norman R & McCaig C (2009) Modelling the bubonic plague in a prairie dog burrow: a work in progress. In: Clark A & Guerriero M (eds.) 8th Workshop on Process Algebra and Stochastically Timed Activities: PASTA 2009. PASTA 2009 - 8th Workshop on Process Algebra and Stochastically Timed Activities, Edinburgh, UK, 26.08.2009-27.08.2009. Edinburgh, UK: University of Edinburgh, pp. 145-152. http://www.cs.stir.ac.uk/~sbk/PASTA2009.pdf

Conference Paper (published)

Improved Continuous Approximation of PEPA Models through Epidemiological Examples

Benkirane S, Hillston J, McCaig C, Norman R & Shankland C (2009) Improved Continuous Approximation of PEPA Models through Epidemiological Examples. In: volume 229. From Biology To Concurrency and back (FBTC 2008), A Satellite Workshop of ICALP 2008, 12.07.2008-12.07.2008. Elsevier, pp. 59-74. https://doi.org/10.1016/j.entcs.2009.02.005

Conference Paper (published)

Studying the effects of adding spatiality to a process algebra model

Maharaj S, McCaig C & Shankland C (2009) Studying the effects of adding spatiality to a process algebra model. In: Clark A & Guerriero M (eds.) 8th Workshop on Process Algebra and Stochastically Timed Activities: PASTA 2009. 8th Workshop on Process Algebra and Stochastically Timed Activities (PASTA 2009): Edinburgh, UK, Edinburgh, 26.08.2009-26.08.2009. Edinburgh, UK: University of Edinburgh, pp. 153-158. http://www.dcs.ed.ac.uk/pepa/group/pastaworkshop/PASTA09/proceedings.pdf

Article

Symbolic-numeric sparse interpolation of multivariate polynomials

Giesbrecht M, Labahn G & Lee W (2009) Symbolic-numeric sparse interpolation of multivariate polynomials. Journal of Symbolic Computation, 44 (8), pp. 943-959. https://doi.org/10.1016/j.jsc.2008.11.003

Article

From Individuals to Populations: A Symbolic Process Algebra Approach to Epidemiology

McCaig C, Norman R & Shankland C (2009) From Individuals to Populations: A Symbolic Process Algebra Approach to Epidemiology. Mathematics in Computer Science, 2 (3), pp. 535-556. http://www.springerlink.com/content/1661-8270/; https://doi.org/10.1007/s11786-008-0066-2

Conference Paper (published)

Process Algebra Models of Population Dynamics

McCaig C, Norman R & Shankland C (2008) Process Algebra Models of Population Dynamics. In: Horimoto K, Regensburger G, Rosenkranz M & Yoshida H (eds.) Algebraic Biology. Lecture Notes in Computer Science, 5147. Algebraic Biology 2008, Castle of Hagenberg, Austria, 31.07.2008-02.08.2008. Berlin Heidelberg: Springer, pp. 139-155. http://www.springerlink.com/content/y26143833jl82307/?MUD=MP; https://doi.org/10.1007/978-3-540-85101-1

Technical Report

Deriving Mean Field Equations from Large Process Algebra Models

McCaig C, Norman R & Shankland C (2008) Deriving Mean Field Equations from Large Process Algebra Models. Technical Report CSM, 175. Department of Computing Science and Mathematics, 爱漫岛.